LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::IdMapping::TinyTranslation - lightweight translation object

SYNOPSIS

  if ( my $tl = $tr->translation ) {
    my $lightweight_tl =
      Bio::EnsEMBL::IdMapping::TinyTranslation->new_fast( [
        $tl->dbID,          $tl->stable_id,
        $tl->version,       $tl->created_date,
        $tl->modified_date, $tr->dbID,
        $tr->translate->seq,
      ] );
  }

DESCRIPTION

This is a lightweight translation object for the stable Id mapping. See the documentation in TinyFeature for general considerations about its design.

METHODS

  transcript_id
  seq

transcript_id

  Arg[1]      : (optional) Int - the transcript internal Id ("dbID")
  Description : Getter/setter for the transcript internal Id this translation is
                attached to.
  Return type : Int
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

seq

  Arg[1]      : (optional) String - the translation's sequence
  Description : Getter/setter for the translation's sequence.
  Return type : String
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development