LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::SubSlicedFeature

SYNOPSIS

my $truncated_gene = Bio::EnsEMBL::Utils::SubSlicedFeature->new( -start => 300, -end => 10000, -feature => $gene); my $transcripts = $truncated_gene->get_all_Transcripts(); # list of transcripts is limited to those within the coordinates, rather # than the original feature Slice.

DESCRIPTION

  Alters the behaviour of a normal Feature object to act within a user-specified 
  sub-slice of of its boundaries. As it stands, this only affects get_all_*
  methods, meaning that seq_region_start() and project() will work on original
  coordinates.