/ 
Bio-EnsEMBL-112.0_53
River stage zero No dependents
/ Bio::EnsEMBL::Genome

LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

CONTACT

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NAME

Bio::EnsEMBL::Genome - A generic Genome class.

SYNOPSIS

use Bio::EnsEMBL::Genome;

my $genome = Bio::EnsEMBL::Genome->new
     (-NAME => 'myName',
      -CODE => 'MyCode',
      -DESCRIPTION => 'This is my statistics description.',
      -VALUE => '10023');

print $statistic->name(), "\n";
print $statistic->code(), "\n";
print $statistic->description(), "\n";
print $statistic->value(), "\n";

DESCRIPTION

This is a generic genome class used to represent statistics associated with a genome and species

SEE ALSO

Bio::EnsEMBL::DBSQL::GenomeContainer

new

Arg [-NAME]        : string - the name for this statistic
Arg [-CODE]        : string - the code for this statistic
Arg [-DESCRIPTION] : string - a description for this statistic
Arg [-VALUE]       : value  - the value of this statistic
Example            :   my $genome = Bio::EnsEMBL::Genome->new
                       (-name => 'myName',
                        -CODE => 'MyCode',
                        -DESCRIPTION => 'This is my statistics description.',
                        -VALUE => '10023');  
Description        : Constructor.  Instantiates a Bio::EnsEMBL::Genome object.
Returntype         : Bio::EnsEMBL::Genome
Exceptions         : none
Caller             : general
Status             : Stable

new_fast

Arg [1]    : hashref to be blessed
Description: Construct a new Bio::EnsEMBL::Genome using the hashref.
Exceptions : none
Returntype : Bio::EnsEMBL::Genome
Caller     : general, subclass constructors
Status     : Stable

statistic

Arg [1]    : string $statistic (optional)
Example    : $statistic = $statistic->name();
Description: Getter/Setter for the statistic name
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

code

Arg [1]    : string $code (optional)
Example    : $code = $genome->code();
Description: Getter/Setter for code statistic
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

name

Arg [1]    : string $name (optional)
Example    : $name = $statistic->name();
Description: Getter/Setter for the name associated to the statistic attribute
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

description

Arg [1]    : string $description (optional)
Example    : $description = $statistic->description();
Description: Getter/Setter for description statistic
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

value

Arg [1]    : string $value (optional)
Example    : $value = $statistic->value();
Description: Getter/Setter for value statistic
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

dbID

Arg [1]    : string $value (optional)
Example    : $dbID = $statistic->dbID();
Description: Getter/Setter for statistic internal id
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable

species_id

Arg [1]    : string $value (optional)
Example    : $species_id = $statistic->dbID();
Description: Getter/Setter for statistic species id
Returntype : string
Exceptions : none
Caller     : general
Status     : Stable