LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

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AUTHOR

Juguang Xiao <juguang@fugu-sg.org>

NAME

Bio::EnsEMBL::Utils::Converter::bio_ens

SYNOPISIS

You should not use this module directly. Please check out the Bio::EnsEMBL::Utils::Converter module.

DESCRIPTION

METHODS

new

Please see Bio::EnsEMBL::Utils::Converter::new

analysis

  Title   : analysis
  Usage   : $self->analysis
  Function: get and set for analysis
  Return  : L<Bio::EnsEMBL::Analysis>
  Args    : L<Bio::EnsEMBL::Analysis>   

contig

  Title   : contig
  Usage   : $self->contig
  Function: get and set for contig
  Return  : 
  Args    :    

dbadaptor

  Title   : dbadaptor
  Usage   : $self->dbadaptor
  Function: get and set for dbadaptor
  Return  : L<Bio::EnsEMBL::DBSQL::DBAdaptor>
  Args    : L<Bio::EnsEMBL::DBSQL::DBAdaptor>   

ensembl_db

  Title   : ensembl_db
  Usage   : 
  Function: 
  Return  :
  Args    :

analysis_dbID

  Title   : analysis_dbID
  Usage   : 
  Function: 
  Return  :
  Args    :

analysis_logic_name

  Title   : analysis_logic_name
  Usage   : 
  Function: 
  Return  :
  Args    :

contig_dbID

  Title   : contig_dbID
  Usage   : $self->contig_dbID
  Function: get and set for contig_dbID
  Return  : 
  Args    :    

contig_name Title : contig_name Usage : $self->contig_name Function: get and set for contig_name Return : Args :

slice_dbID Title : slice Usage : $self->slice Function: get and set for slice Return : Bio::EnsEMBL::Slice Args : Bio::EnsEMBL::Slice

slice_chr_start_end Title : slice_chr_start_end Usage : my $slice = $self->slice_chr_start_end($chr, $start, $end); Function: get and set for slice_chr_start_end Return : Args :

cpanm Bio::EnsEMBL

perl -MCPAN -e shell
install Bio::EnsEMBL