NAME

Bio::EnsEMBL - API to connect to and work with EnsEMBL genomic databases

SYNOPSIS

    use Bio::EnsEMBL::Registry;

    Bio::EnsEMBL::Registry->load_registry_from_db(
        -host => 'ensembldb.ensembl.org',
        -user => 'anonymous',
        -db_version => 112,
        -species => 'homo sapiens',
        -group => 'core'
    );
    my $slice_adaptor = Bio::EnsEMBL::Registry->get_adaptor(
        'homo sapiens', 'Core', 'Slice'
    );
    my $slice = $slice_adaptor->fetch_by_gene_stable_id('ENSG00000101266');
    say $slice->display_id();

DESCRIPTION

Bio::EnsEMBL is the namespace for the EnsEMBL Core API. The Core API provides access to the EnsEMBL genomic databases.

Most people will want to use Bio::EnsEMBL::Registry as an entry point.

SEE ALSO

https://www.ensembl.org/info/docs/api/index.html

SUPPORT

Please email comments or questions to the public EnsEMBL developers list at http://lists.ensembl.org/mailman/listinfo/dev.

Questions may also be sent to the EnsEMBL help desk at http://www.ensembl.org/Help/Contact.

COPYRIGHT AND LICENCE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute

Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0