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Bio-EnsEMBL-112.0_55
River stage zero No dependents
/ Bio::EnsEMBL::DensityPlot::BinValueSet

LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

CONTACT

  Please email comments or questions to the public Ensembl
  developers list at <http://lists.ensembl.org/mailman/listinfo/dev>.

  Questions may also be sent to the Ensembl help desk at
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NAME

Bio::EnsEMBL::DensityPlot::BinValueSet

SYNOPSIS

DESCRIPTION

METHODS

add_binvalue

 Title   : add_binValue
 Usage   :
 Function:
 Example :
 Returns : 
 Args    :

get_binvalues

 Title   : get_binvalues
 Usage   : my @binvalue_objects = $BVSet->get_binvalues
 Function: scales all the binvalues by the scale_factor and returns them.
 Example :
 Returns : array of BinValue objects 
 Args    : none

position

 Title   : position
 Usage   : $obj->position($newval)
 Function: 
 Returns : value of position
 Args    : newvalue (optional)

label

 Title   : label
 Usage   : $obj->label($newval)
 Function: 
 Returns : value of label
 Args    : newvalue (optional)

label2

 Title   : label2
 Usage   : $obj->label2($newval)
 Function: 
 Returns : value of label2
 Args    : newvalue (optional)

color

 Title   : color
 Usage   : $obj->color($newval)
 Function: 
 Returns : value of color
 Args    : newvalue (optional)

shape

 Title   : shape
 Usage   : $obj->shape($newval)
 Function: 
 Returns : value of shape
 Args    : newvalue (optional)

stretch

 Title   : stretch
 Usage   : $obj->stretch($newval)
 Function: gets/sets a boolean for whether we should stretch the data over the
 range (i.e. from min to max rather than absolute numbers).
 Returns : value of _stretch
 Args    : newvalue (optional)

scale_to_fit

 Title   : scale_to_fit
 Usage   : $obj->scale_to_fit($newval)
 Function: gets/sets the number that the BinValues are to be scaled against -
 i.e. the greatest BinValue->value will be scaled to this number, and the rest
 scaled in proportion.
 Returns : scale_to_fit value
 Args    : newvalue (optional)

_store_biggest

 Title   : _store_biggest
 Usage   : $self->_store_biggest($newval)
 Function: internal method for storing the largest BinValue->value in this set.
 Returns : biggest value seen so far
 Args    : value

_store_smallest

 Title   : _store_smallest
 Usage   : $self->_store_smallest($newval)
 Function: internal method for storing the smallest BinValue->value in this set.
 Returns : smallest value seen so far
 Args    : value