LICENSE
Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
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<http://www.ensembl.org/Help/Contact>.NAME
Bio::EnsEMBL::SubSlicedFeature
SYNOPSIS
my $truncated_gene = Bio::EnsEMBL::Utils::SubSlicedFeature->new( -start => 300, -end => 10000, -feature => $gene); my $transcripts = $truncated_gene->get_all_Transcripts(); # list of transcripts is limited to those within the coordinates, rather # than the original feature Slice.
DESCRIPTION
Alters the behaviour of a normal Feature object to act within a user-specified
sub-slice of of its boundaries. As it stands, this only affects get_all_*
methods, meaning that seq_region_start() and project() will work on original
coordinates.