/ 
Bio-EnsEMBL-112.0_55
River stage zero No dependents
/ Bio::EnsEMBL::Utils::Converter::bio_ens

LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

CONTACT

Please email comments or questions to the public Ensembl
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Questions may also be sent to the Ensembl help desk at
<http://www.ensembl.org/Help/Contact>.

AUTHOR

Juguang Xiao <juguang@fugu-sg.org>

NAME

Bio::EnsEMBL::Utils::Converter::bio_ens

SYNOPISIS

You should not use this module directly. Please check out the Bio::EnsEMBL::Utils::Converter module.

DESCRIPTION

METHODS

new

Please see Bio::EnsEMBL::Utils::Converter::new

analysis

Title   : analysis
Usage   : $self->analysis
Function: get and set for analysis
Return  : L<Bio::EnsEMBL::Analysis>
Args    : L<Bio::EnsEMBL::Analysis>

contig

Title   : contig
Usage   : $self->contig
Function: get and set for contig
Return  : 
Args    :

dbadaptor

Title   : dbadaptor
Usage   : $self->dbadaptor
Function: get and set for dbadaptor
Return  : L<Bio::EnsEMBL::DBSQL::DBAdaptor>
Args    : L<Bio::EnsEMBL::DBSQL::DBAdaptor>

ensembl_db

Title   : ensembl_db
Usage   : 
Function: 
Return  :
Args    :

analysis_dbID

Title   : analysis_dbID
Usage   : 
Function: 
Return  :
Args    :

analysis_logic_name

Title   : analysis_logic_name
Usage   : 
Function: 
Return  :
Args    :

contig_dbID

Title   : contig_dbID
Usage   : $self->contig_dbID
Function: get and set for contig_dbID
Return  : 
Args    :

contig_name Title : contig_name Usage : $self->contig_name Function: get and set for contig_name Return : Args :

slice_dbID Title : slice Usage : $self->slice Function: get and set for slice Return : Bio::EnsEMBL::Slice Args : Bio::EnsEMBL::Slice

slice_chr_start_end Title : slice_chr_start_end Usage : my $slice = $self->slice_chr_start_end($chr, $start, $end); Function: get and set for slice_chr_start_end Return : Args :