LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::IdMapping::Entry - object representing a ScoredMappingMatrix entry

SYNOPSIS

DESCRIPTION

This object represents a ScoredMappingMatrix entry. It is defined by a pair of a source and target object's internal Id and a score for this mapping.

METHODS

  new
  new_fast
  source
  target
  score
  to_string

new

  Example     : my $entry = Bio::EnsEMBL::IdMapping::Entry->new();
  Description : Constructor. This is a no-argument constructor, so you need to
                populate the object manually. Rarely used since in most cases
                new_fast() is preferred.
  Return type : a Bio::EnsEMBL::IdMapping::Entry object
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

new_fast

  Arg[1]      : Arrayref $array_ref - the arrayref to bless into the Entry
                object 
  Example     : my $entry = Bio::EnsEMBL::IdMapping::Entry->new_fast([
                  $source_gene->id, $target_gene->id, 0.9]);
  Description : Fast constructor.
  Return type : a Bio::EnsEMBL::IdMapping::Entry object
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

source

  Arg[1]      : (optional) Int - source object's internal Id
  Description : Getter/setter for source object's internal Id.
  Return type : Int
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

target

  Arg[1]      : (optional) Int - target object's internal Id
  Description : Getter/setter for target object's internal Id.
  Return type : Int
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

score

  Arg[1]      : (optional) Float - a score
  Description : Getter/setter for score for the mapping between source and
                target object.
  Return type : Float
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development

to_string

  Example     : print LOG $entry->to_string, "\n";
  Description : Returns a string representation of the Entry object. Useful for
                debugging and logging.
  Return type : String
  Exceptions  : none
  Caller      : general
  Status      : At Risk
              : under development