LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

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NAME

Bio::EnsEMBL::Map::MapLocation

SYNOPSIS

DESCRIPTION

Represents a location on a genetic map, yac map, radition hybrid map, etc.

METHODS

new

Arg [1]    : (optional) string $name
Arg [2]    : (optional) string $map_name
Arg [3]    : (optional) string $chromosome_name
Arg [4]    : (optional) string $position
Arg [5]    : (optional) float $lod_score
Example    : $map_location = Bio::EnsEMBL::Map::MapLocation->
               new('DS1234',
                   'genethon',
                   'X',
                   '12.39',
                   50.12);
Description: Creates a new MapLocation
Returntype : Bio::EnsEMBL::Map::MapLocation
Exceptions : none
Caller     : general
Status     : stable

map_name

Arg [1]    : string $map_name
Example    : $map_name = $map_location->map_name;
Description: Getter/Setter for the map name
Returntype : string
Exceptions : none
Caller     : general
Status     : stable

name

Arg [1]    : (optional) string $name
Example    : $name = $map_location->name;
Description: A name associated with the marker at this position.  For
             example if this is a genethon map location the name will be
             the synonym of source genethon.
Returntype : string
Exceptions : none
Caller     : general
Status     : stable

chromosome_name

Arg [1]    : (optional) string $chromosome_name
Example    : $chr_name = $map_location->chromosome_name;
             $map_location->chromosome_name('X');
Description: The name of the chromosome associated with this map location
Returntype : string
Exceptions : none
Caller     : general
Status     : stable

position

Arg [1]    : (optional) string $position
Example    : $pos = $map_location->position;
Description: Getter/Setter for the position of this map location
Returntype : string
Exceptions : none
Caller     : general
Status     : stable

lod_score

Arg [1]    : (optional) float $lod
Example    : $lod = $map_location->lod_score;
Description: Getter/Setter for lod score of this map location
Returntype : float
Exceptions : none
Caller     : general
Status     : stable