LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::IdMapping::TinyTranslation - lightweight translation object

SYNOPSIS

if ( my $tl = $tr->translation ) {
  my $lightweight_tl =
    Bio::EnsEMBL::IdMapping::TinyTranslation->new_fast( [
      $tl->dbID,          $tl->stable_id,
      $tl->version,       $tl->created_date,
      $tl->modified_date, $tr->dbID,
      $tr->translate->seq,
    ] );
}

DESCRIPTION

This is a lightweight translation object for the stable Id mapping. See the documentation in TinyFeature for general considerations about its design.

METHODS

transcript_id
seq

transcript_id

Arg[1]      : (optional) Int - the transcript internal Id ("dbID")
Description : Getter/setter for the transcript internal Id this translation is
              attached to.
Return type : Int
Exceptions  : none
Caller      : general
Status      : At Risk
            : under development

seq

Arg[1]      : (optional) String - the translation's sequence
Description : Getter/setter for the translation's sequence.
Return type : String
Exceptions  : none
Caller      : general
Status      : At Risk
            : under development