LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

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     http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::Mapper::Pair

SYNOPSIS

DESCRIPTION

Two regions mapped between different coordinate systems are each represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a Bio::EnsEMBL::Mapper::Pair.

METHODS

to

  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
              from and to represent the two regions
              which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable

from

  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
              from and to represent the two regions
              which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable

ori

  Arg  1      Bio::EnsEMBL::Mapper::Unit $ori
  Function    accessor method
              relative orientation of the the
              two mapped regions
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable