NAME

Bio::Roary::External::Mcl - Wrapper around MCL which takes in blast results and outputs clustered results

VERSION

version 3.0.3

SYNOPSIS

Wrapper around MCL which takes in blast results and outputs clustered results

use Bio::Roary::External::Mcl;

my $mcl= Bio::Roary::External::Mcl->new(
  blast_results     => 'db',
  mcxdeblast_exec   => 'mcxdeblast',
  mcl_exec          => 'mcl',
  output_file       => 'output.groups'
);

$mcl->run();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007