NAME

Bio::Roary::External::Mafft - Wrapper to run mafft

VERSION

version 3.4.3

SYNOPSIS

Wrapper to run mafft use Bio::Roary::External::Mafft;

my $mafft_obj = Bio::Roary::External::Mafft->new(
  input_filename  => $fasta_file,
  output_filename => $fasta_file.'.aln',
  job_runner      => 'Local'
);
$mafft_obj->run();

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007