NAME

Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

VERSION

version 3.5.3

SYNOPSIS

Take in a fasta file and create a temporary blast database.

use Bio::Roary::External::Makeblastdb;

my $blast_database= Bio::Roary::External::Makeblastdb->new(
  fasta_file => 'contigs.fa',
  exec       => 'makeblastdb'
);

$blast_database->run();

METHODS

output_database

Returns the path to the temporary blast database files

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007