NAME

Bio::Roary::External::Cdhit - Wrapper to run cd-hit

VERSION

version 3.5.8

SYNOPSIS

Wrapper to run cd-hit use Bio::Roary::External::Cdhit;

 my $obj = Bio::Roary::External::Cdhit->new(
   input_file   => 'abc.fa',
   exec         => 'cd-hit',
   output_base  => 'efg',
 );
$obj->run;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007