NAME

Bio::AssemblyImprovement::Abacas::DelimiterRole - Moose Role for putting in delimiters for Abacas to join up contigs

VERSION

version 1.160490

SYNOPSIS

Moose Role for putting in delimiters for Abacas to join up contigs

use Bio::AssemblyImprovement::Abacas::DelimiterRole;
with 'Bio::AssemblyImprovement::Abacas::DelimiterRole';

METHODS

_merge_contigs_into_one_sequence

Given a fasta file with multiple sequences, merge into a single sequence with a known delimiter.

_split_sequence_on_delimiter

Deplex a sequence which contains delimited sub sequences.

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007