NAME

Multilocus sequence typing checking

SYNOPSIS

use Bio::MLST::Check; Bio::MLST::Check->new( 'species' => 'E.coli', 'base_directory' => '/path/to/dir', 'raw_input_fasta_files' => ['myfasta.fa'], 'makeblastdb_exec' => 'makeblastdb', 'blastn_exec' => 'blastn', 'output_directory' => '/path/to/output', 'output_fasta_files'=> 1, );