NAME

CompareAlleles - Take in an assembly file in Fasta format, and a list of allele files (in multifasta format) and return a list of the alleles and IDs.

SYNOPSIS

use Bio::MLST::CompareAlleles;

my $compare_alleles = Bio::MLST::CompareAlleles->new(

sequence_filename => 'contigs.fa',
allele_filenames => ['abc.tfa','efg.tfa']
);
$compare_alleles->found_sequence_names;
$compare_alleles->matching_sequences;