NAME

ProcessFasta - Take in a fasta file, lookup the MLST database and create relevant files.

SYNOPSIS

use Bio::MLST::ProcessFasta; Bio::MLST::ProcessFasta->new( 'species' => 'E.coli', 'base_directory' => '/path/to/dir', 'fasta_file' => 'myfasta.fa', 'makeblastdb_exec' => 'makeblastdb', 'blastn_exec' => 'blastn', 'output_directory' => '/path/to/output', 'output_fasta_files'=> 1, );