NAME

Bio::MLST::Blast::BlastN

SYNOPSIS

Run NCBI blast and find the top hit.

DESCRIPTION

use Bio::MLST::Blast::BlastN;

my $blast_database= Bio::MLST::Blast::BlastN->new( blast_database => 'output_contigs', query_file => 'alleles/adk.tfa', word_size => 500, exec => 'blastn' );

$blast_database->top_hit(); =head1 CONTACT path-help@sanger.ac.uk