NAME Bio::MLST::NormaliseFasta =head1 SYNOPSIS Take in a Fasta file, check for invalid characters and build a corrected file if needed. This is needed for NCBI makeblastdb which doesnt like the pipe character in the sequence name.

DESCRIPTION

use Bio::MLST::NormaliseFasta;

my $output_fasta = Bio::MLST::NormaliseFasta->new( fasta_filename => 'Filename.fasta'

); $output_fasta->processed_fasta_filename(); =head1 CONTACT path-help@sanger.ac.uk