/ 
bioperl-microarray-0.1
/ Bio::Expression::Microarray::Affymetrix::ArrayDesign

NAME

Bio::Expresssion::Affymetrix::ArrayDesign - Affy Chip Template.

SYNOPSIS

DESCRIPTION

FEEDBACK

Direct feedback to <allenday@ucla.edu> or to the Bioperl mailing list (see below).

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

bioperl-l@bioperl.org            - General discussion
http://bioperl.org/MailList.shtml - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bio.perl.org
http://bio.perl.org/bioperl-bugs/

AUTHOR

Allen Day <allenday@ucla.edu>

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

_initialize

Title   : _initialize
Function: For compatibility with Bioperl. Defers to init().

init

Title   : init
Function: For compatibility with Class::MakeMethods.

matrix

Title   : matrix
Usage   : $self->matrix($x_coord, $y_coord, \$feature)
Function: get-set method for matrix object/coordinate pair
Returns : a matrix location
Args    : A coordinate for a matrix location and optional value

featuregroup

Title   : featuregroup
Usage   : $self->featuregroup->($featurename);
Function: get-set method for FeatureGroup object
Returns : a Bio::Expression::FeatureGroup object
Args    : A key for a FeatureGroup object

qc_featuregroup

Title   : qc_featuregroup
Usage   : $self->qc_featuregroup($mode);
Function: get-set method for quality control FeatureGroup object
Returns : a Bio::Expression::FeatureGroup object
Args    : A key for a FeatureGroup object

each_featuregroup

Title   : each_featuregroup
Usage   : @featuregroups = $array->each_featuregroup();
Function: gets a list of FeatureGroup objects
Returns : returns list of FeatureGroup objects
Args    : none

Title   : each_qcfeaturegroup
Usage   : @qcfeaturegroups = $array->each_qcfeaturegroup();
Function: gets a list of quality control FeatureGroup objects
Returns : returns list of quality control FeatureGroup objects
Args    : none

Title   : load_data
Usage   : $array->load_data($line);
Function: parses current line of file and loads information
Returns : nothing
Args    : The line of text to be parsed