NAME
Bio::Map::PositionI - Abstracts the notion of a position having a value in the context of a marker and a Map
SYNOPSIS
# do not use directlyDESCRIPTION
This object stores one of the postions a that a mappable object (e.g. Marker) may have in a map (e.g. restriction enzymes or a SNP mapped to several chromosomes).
The method numeric() returns the position in a form that can be compared between other positions of the same type.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/MailList.shtml - About the mailing listsReporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/AUTHOR - Jason Stajich
Email jason@bioperl.org
Describe contact details here
CONTRIBUTORS
Lincoln Stein, lstein@cshl.org Heikki Lehvaslaiho, heikki@ebi.ac.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
map
Title : map
Usage : my $id = map->$map;
Function: Get/Set the map the position is in.
Returns : L<Bio::Map::MapI>
Args : [optional] new L<Bio::Map::MapI>marker
Title : marker
Usage : my $id = marker->$marker;
Function: Get/Set the marker the position is in.
Returns : L<Bio::Map::MarkerI>
Args : [optional] new L<Bio::Map::MarkerI>value
Title : value
Usage : my $pos = $position->value;
Function: Get/Set the value for this position
Returns : scalar, value
Args : [optional] new value to setnumeric
Title : numeric
Usage : my $num = $position->numeric;
Function: Read-only method that is guarantied to return
representation for this position that can be compared with others
Returns : numeric (int, real or range)
Args : none