/ 
bioperl-1.2.2
/ Bio::Ontology::TermFactory

NAME

Bio::Ontology::TermFactory - Instantiates a new Bio::Ontology::TermI (or derived class) through a factory

SYNOPSIS

use Bio::Ontology::TermFactory;

# the default type is Bio::Ontology::Term
my $factory = new Bio::Ontology::TermFactory(-type => 'Bio::Ontology::GOterm');
my $term = $factory->create_object(-name => 'peroxisome',
                                   -ontology => 'Gene Ontology',
                                   -identifier => 'GO:0005777');

DESCRIPTION

This object will build Bio::Ontology::TermI objects generically.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org              - General discussion
http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/

AUTHOR - Hilmar Lapp

Email hlapp at gmx.net

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = new Bio::Ontology::TermFactory();
Function: Builds a new Bio::Ontology::TermFactory object 
Returns : Bio::Ontology::TermFactory
Args    : -type => string, name of a L<Bio::Ontology::TermI> derived class.
                   The default is L<Bio::Ontology::Term>.

create_object

Title   : create_object
Usage   : my $term = $factory->create_object(<named parameters>);
Function: Instantiates new Bio::Ontology::TermI (or one of its child classes)

          This object allows us to genericize the instantiation of
          Term objects.

Returns : L<Bio::Ontology::TermI> compliant object
          The return type is configurable using new(-type =>"...").
Args    : initialization parameters specific to the type of term
          object we want.  Typically 
          -name        => $name
          -identifier  => identifier for the term
          -ontology    => ontology for the term