NAME

Bio::Tools::Signalp

SYNOPSIS

use Bio::Tools::Signalp;
my $parser = new Bio::Tools::Signalp(-fh =>$filehandle );
while( my $sp_feat = $parser->next_result ) {
      #do something
      #eg
      push @sp_feat, $sp_feat;
}

DESCRIPTION

Parser for Signalp output

FEEDBACK

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User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.

bioperl-l@bioperl.org              - General discussion
http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:

bioperl-bugs@bio.perl.org
http://bugzilla.bioperl.org/

AUTHOR

Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Signalp
originally written by Marc Sohrmann (ms2@sanger.ac.uk)
Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org>
Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)

APPENDIX

The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = new Bio::Tools::Signalp();
Function: Builds a new Bio::Tools::Signalp object
Returns : Bio::Tools::Signalp
Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO

next_result

Title   : next_result
Usage   : my $feat = $signalp->next_result
Function: Get the next result set from parser data
Returns : Bio::SeqFeature::Generic
Args    : none

create_feature

Title   : create_feature
Usage   : obj->create_feature(\%feature)
Function: Internal(not to be used directly)
Returns :
Args    :

seqname

Title   : seqname
Usage   : obj->seqname($name)
Function: Internal(not to be used directly)
Returns :
Args    :

fact1

Title   : fact1
Usage   : obj->fact1($fact1)
Function: Internal(not to be used directly)
Returns :
Args    :