NAME

Bio::Tools::Tmhmm - parse TmHMM output (transmembrane HMM)

SYNOPSIS

use Bio::Tools::Tmhmm;
my $parser = new Bio::Tools::Tmhmm(-fh =>$filehandle );
while( my $tmhmm_feat = $parser->next_result ) {
   #do something
   #eg
   push @tmhmm_feat, $tmhmm_feat;
}

DESCRIPTION

Parser for Tmhmm output

FEEDBACK

Mailing Lists

user feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org              - General discussion
http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bioperl.org
http://bugzilla.bioperl.org/

AUTHOR - Bala

Email savikalpa@fugu-sg.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = new Bio::Tools::Tmhmm();
Function: Builds a new Bio::Tools::Tmhmm object
Returns : Bio::Tools::Tmhmm
Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO

next_result

Title   : next_result
Usage   : my $feat = $Tmhmm->next_result
Function: Get the next result set from parser data
Returns : Bio::SeqFeature::Generic
Args    : none

create_feature

Title   : create_feature
Usage   : obj->create_feature(\%feature)
Function: Internal(not to be used directly)
Returns : A Bio::SeqFeature::Generic object
Args    :

_seqname

Title   :   _seqname
Usage   :   obj->_seqname($seqname)
Function:   Internal(not to be used directly)
Returns :
Args    :   seqname