/ 
bioperl-db-0.1
/ Bio::DB::Map::SQL::MarkerAdaptor

NAME

Bio::DB::Map::SQL::MarkerAdaptor - Adaptor Object for Markers

SYNOPSIS

Give standard usage here

DESCRIPTION

Describe the object here

FEEDBACK

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User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org             - General discussion
http://bioperl.org/MailList.shtml - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bioperl.org
http://bioperl.org/bioperl-bugs/

AUTHOR - Jason Stajich

Email jason@chg.mc.duke.edu

Describe contact details here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

get

Title   : get
Usage   : my @markers = $markeradaptor->get(-ids => \@ids );
Function: gets a list of Bio::DB::Map::Marker objects based on
          the list of queries
Returns : list of Bio::DB::Map::Marker objects
Args    : -id   => markerid
          -ids  => array ref of marker ids
          -name => marker name
          -names=> array ref of marker names
          -pcrprimers => array ref of pcrprimers to use to search for marker

write

Title   : write
Usage   : $marker_adaptor->write($marker);
Function: Store a new Marker or update an existing one 
Returns : Bio::DB::Map::MarkerI object (id updated if necessary)
          or undef if not properly updated 
Args    : Bio::DB::Map::MarkerI object

delete

Title   : delete
Usage   : $markeradaptor->delete($marker);
Function: Removes a marker from the database
Returns : none
Args    : Bio::DB::Map::MarkerI object

add_duplicate_marker

Title   : add_marker_duplicate_marker
Usage   : boolean $adaptor->add_duplicate_marker($marker ); 
Function: Tries to find a duplicate marker for a marker and 
          updates it to contain merge of the two information srcs
Returns : boolean if marker was added
Args    : Bio::DB::Map::MarkerI object