/ 
bioperl-db-0.1
/ Bio::DB::SQL::DBAdaptor

NAME

Bio::DB::SQL::DBAdapter - Object representing an instance of a bioperl database

SYNOPSIS

$db = Bio::DB::SQL::DBAdaptor->new(
    -user   => 'root',
    -dbname => 'pog',
    -host   => 'caldy',
    -driver => 'mysql',
    );

DESCRIPTION

This object represents a database that is implemented somehow (you shouldn\'t care much as long as you can get the object). From the object you can pull out other adapters, such as the BioSeqAdapter,

CONTACT

Describe contact details here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

prepare

Title   : prepare
Usage   : $sth = $dbobj->prepare("select seq_start,seq_end from feature where analysis = \" \" ");
Function: prepares a SQL statement on the DBI handle
Example :
Returns : A DBI statement handle object
Args    : a SQL string

get_PrimarySeqAdaptor

Title   : get_PrimarySeqAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqAdaptor

Title   : get_SeqAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_BioDatabaseAdaptor

Title   : get_BioDatabaseAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqFeatureKeyAdaptor

Title   : get_SeqFeatureKeyAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqFeatureKeyAdaptor

Title   : get_SeqFeatureKeyAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqFeatureSourceAdaptor

Title   : get_SeqFeatureSourceAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqLocationAdaptor

Title   : get_SeqLocationAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SeqLocationAdaptor

Title   : get_SeqLocationAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_CommentAdaptor

Title   : get_CommentAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_ReferenceAdaptor

Title   : get_ReferenceAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_DBLinkAdaptor

Title   : get_DBLinkAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

get_SpeciesAdaptor

Title   : get_SpeciesAdaptor
Usage   :
Function:
Example :
Returns : 
Args    :

_db_handle

Title   : _db_handle
Usage   : $obj->_db_handle($newval)
Function: 
Example : 
Returns : value of _db_handle
Args    : newvalue (optional)

DESTROY

Title   : DESTROY
Usage   :
Function:
Example :
Returns : 
Args    :