NAME

Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph

SYNOPSIS

See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

DESCRIPTION

This glyph draws a chromosome ideogram using scored features instead of cytobands. It is a hybrid of the heat_map and ideograms glyphs and accepts options for both. A typical usage would be to pair this glyph with an aggregator that groups scored features such as blast hits or gene_density bins, etc with a centromere. The result is a chromosome ideogram that has bands whose colors vary porportionate to the feature score.

OPTIONS

See Bio::Graphics::Glyph for a full explanation of standard options.

See Bio::Graphics::Glyph::heat_map for an explanation of heat_map options.

See Bio::Graphics::Glyph::ideogram for an explanation of ideogram options.

BUGS

Please report them.

AUTHOR

Sheldon McKay <mckays@cshl.edu>

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

To install Bio::Graphics, copy and paste the appropriate command in to your terminal.

cpanm

cpanm Bio::Graphics

CPAN shell

perl -MCPAN -e shell
install Bio::Graphics

For more information on module installation, please visit the detailed CPAN module installation guide.

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