/ 
BioPerl-1.6.901
River stage two • 60 direct dependents • 65 total dependents
/ Bio::Structure::Chain

NAME

Bio::Structure::Chain - Bioperl structure Object, describes a chain

SYNOPSIS

#add synopsis here

DESCRIPTION

This object stores a Bio::Structure::Chain

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Kris Boulez

Email kris.boulez@algonomics.com

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new()

 Title   : new()
 Usage   : $struc = Bio::Structure::Chain->new( 
                           -id  => 'human_id',
                           -accession_number => 'AL000012',
                                           );

 Function: Returns a new Bio::Structure::Chain object from basic 
	        constructors. Usually called from Bio::Structure::IO.
 Returns : a new Bio::Structure::Chain object

residue()

Title   : residue 
Usage   : 
Function:  nothing useful until I get symbolic references to do what I want
Returns : 
Args    :

add_residue()

Title   : add_residue
Usage   : 
Function: nothing useful until I get symbolic references to do what I want
Returns : 
Args    :

model()

Title   : model
Usage   : 
Function: nothing useful until I get symbolic references to do what I want
Returns : 
Args    :

id()

Title   : id
Usage   : $chain->id("chain B")
Function: Gets/sets the ID for this chain
Returns : the ID
Args    : the ID

_remove_residues()

Title   : _remove_residues
Usage   : 
Function: 
Returns : 
Args    :

_remove_model()

Title   : _remove_model
Usage   : 
Function: Removes the Model this Chain is atttached to.
Returns : 
Args    :

_grandparent()

Title   : _grandparent
Usage   : 
Function: get/set a symbolic reference to our grandparent
Returns : 
Args    :