/ 
BioPerl-1.6.901
River stage two • 60 direct dependents • 65 total dependents
/ Bio::Tools::EUtilities::Query::GlobalQuery

NAME

Bio::Tools::EUtilities::Query::GlobalQuery - container class for egquery data

SYNOPSIS

#### should not create instance directly; Bio::Tools::EUtilities does this ####

my $parser = Bio::Tools::EUtilities->new(-eutil => 'egquery',
                                         -term  => 'BRCA1');

# $gquery is a Bio::Tools::EUtilities::Query::GlobalQuery
while (my $gquery = $parser->next_GlobalQuery) {
   print $gquery->to_string."\n"; # stringify
   print "DB:".$gquery->get_db."\t".$gquery->get_count;
}

DESCRIPTION

This is a simple container class for egquery data. Currently this just contains various accessors for the data, such as get_database(), get_count(), etc. for each item in a global query.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

bioperl-l@lists.open-bio.org               - General discussion
http://www.bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web.

https://redmine.open-bio.org/projects/bioperl/

AUTHOR

Email cjfields at bioperl dot org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

get_term

Title   : get_term
Usage   : $st = $qd->get_term;
Function: retrieve the term for the global search
Returns : string
Args    : none

get_database

Title   : get_database
Usage   : $ct = $qd->get_database;
Function: retrieve the database
Returns : string
Args    : none

get_count

Title   : get_count
Usage   : $ct = $qd->get_count;
Function: retrieve the count for the database
Returns : string
Args    : none

get_status

Title   : get_status
Usage   : $st = $qd->get_status;
Function: retrieve the query status for database in db()
Returns : string
Args    : none

get_menu_name

Title   : get_menu_name
Usage   : $ct = $qd->get_menu_name;
Function: retrieve the full name for the database in db()
Returns : string
Args    : None

to_string

Title    : to_string
Usage    : $foo->to_string()
Function : converts current object to string
Returns  : none
Args     : (optional) simple data for text formatting
Note     : Used generally for debugging and for the print_GlobalQuery method