NAME

GO::Parsers::go_assoc_parser     - syntax parsing of GO gene-association flat files

SYNOPSIS

do not use this class directly; use GO::Parser

DESCRIPTION

This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for details

Examples of these files can be found at http://www.geneontology.org

A description of the event streams generated follows; Stag or an XML handler can be used to catch these events

GO GENE ASSOCIATION FILES

These have the prefix gene_association; eg gene_association.fb

 (assocs
  (dbset+
    (proddb "s")
    (prod+
      (prodacc "s")
      (prodsymbol "s")
      (prodtype "s")
      (prodtaxa "i")
      (assoc+
        (assocdate "i")
        (source_db "s")
        (termacc "s")
        (is_not "i")
        (aspect "s")
        (evidence+
          (evcode "s")
          (ref "s")))))) 

AUTHOR