NAME

GO::Model::Relationship

SYNOPSIS

DESCRIPTION

a relationship between two GO::Model::Terms

relationships can be thought of as statements or sentences of the form

SUBJECT-TERM PREDICATE OBJECT-TERM

for example,

"dog" IS_A "animal"

"G-Protein coupled receptor" IS_A "transmembrane receptor"

Statements have a subject (i.e. the subject of the sentence/statement), a predicate/relationship-type and an object (i.e. the object of the sentence/statement)

Relationships can also be seen as arcs in a directed graph, with the subject being equivalent to the child, and the object equivalent to the parent. The arc is labeled with the predicate/relationship-type.

A Relationship object currently does not contain an actual pointer to a GO::Model::Term object. Instead it stores the ID of that term. This is intended to be used in conjunction with the Graph object, or with the database.

subject_acc

Title   : subject_acc
Usage   : $obj->subject_acc($newid)
Usage   : $currid = $obj->subject_acc()
Synonyms: subj_acc, acc2, child_acc
Function: gets or sets the identifier for the child/subject term
Example : 
Returns : value of subject_acc (string)
Args    : on set, new value (string)

All Relationships can be thought of "subject-predicate-object" statements. The statement is *about* the subject, and states something about the relationship *to* the object.

For example, the if we have a Relationship:

 cell
   ^
   |
   | [part_of]
   |
cell nucleus

This is a statement about cell nuclei in general, so "cell nucleus" is the subject (sometimes called the child node). The Relationship tells us that all cell nuclei are part_of some cell, so the object of the relationship (sometimes called the parent node) is "cell"

object_acc

Title   : object_acc
Usage   : $obj->object_acc($newid)
Usage   : $currid = $obj->object_acc()
Synonyms: obj_acc, acc1, parent_acc
Function: gets or sets the identifier for the parent/object term
Example : 
Returns : value of object_acc (string)
Args    : on set, new value (string)
See Also: subj_acc

type

Title   : type
Usage   : $obj->type($newval)
Usage   : $currval = $obj->type()
Synonyms: 
Function: gets or sets the relationship type (a string)
Example : 
Returns : value of type (string)
Args    : on set, new value (string)

Currently any string is allowed; in future the type string may be constrained to come from a controlled vocabulary of relationship types