NAME

compress-db.pl - Post-process assembler for transcript enrichment using 42

VERSION

version 0.202160

USAGE

compress.pl --config=<file> --indir=<dir> [optional arguments]

REQUIRED ARGUMENTS

--config=<file>

Path to YAML config file for 42.

--indir=<dir>

Path to input tax-report files.

OPTIONAL ARGUMENTS

--cap3-o=<n>

Overlap length cutoff for CAP3 (should be > 15) [default: 40].

--cap3-p=<n>

Overlap percent identity cutoff for CAP3 (should be > 65) [default: 90].

--verbosity=<level>

Verbosity level for logging to STDERR [default: 0]. Available levels range from 0 to 6. Level 6 corresponds to debugging mode.

--version

--usage

--help

--man

Print the usual program information

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.