NAME

subs-forest.pl - Subsample forest (multiple trees) files (and restore ids)

VERSION

version 0.240390

USAGE

subs-forest.pl <infiles> [optional arguments]

REQUIRED ARGUMENTS

<infiles>

Path to input forest files [repeatable argument].

OPTIONAL ARGUMENTS

--in[-strip]=<str>

Substring(s) to strip from infile basenames before attempting to derive other infile (e.g., IDM files) and outfile names [default: none].

--out[-suffix]=<suffix>

Suffix to append to infile basenames for deriving outfile names [default: none]. When not specified, outfile names are taken from infiles but original infiles are preserved by being appended a .bak suffix.

--map-ids

Sequence id mapping switch [default: no]. When specified, sequence ids are restored from the corresponding IDM files.

-x <burnin> [<every> [<until>]]

Forest subsampling scheme [default: 0 1 Inf]. This option follows PhyloBayes' bpcomp and readpb usage.

--version

--usage

--help

--man

Print the usual program information

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.