NAME
resample-ali.pl - Resample ALI files using (variable length) bootstrap or jackknife
VERSION
version 0.250380
USAGE
resample-ali.pl <infiles> [optional arguments]REQUIRED ARGUMENTS
OPTIONAL ARGUMENTS
- --resampling=<mode>
-
Mode of resampling to perform on the ALI [default: bootstrap]. The following modes are available: bootstrap and jackknife.
- --rep[licates]=<n>
-
Number of pseudo-replicates [default: 100].
- --width=<n>...
-
Number of positions to be included in each pseudo-replicate [default: 1]. When specified as a fraction between 0 and 1 (included), it is interpreted as relative to the width of the ALI. Thus 10000 would mean 10,000 sites whereas 0.5 would mean half the width of the ALI. Hence, the default is to generate pseudo-replicates of the same width as the ALI. Multiple values can be provided if they are whitespace-separated.
- --version
- --usage
- --help
- --man
-
Print the usual program information
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.