/ 
Bio-MUST-Drivers-0.180270
River stage one • 4 direct dependents • 4 total dependents

Changes for version 0.180270 - 2018-01-28

  • Additions
    • CdHit: new driver
  • Changes
    • Blast: changed API for a database-centered view; breaks existing code!
    • Hmmer: changed API for a model-centered view; breaks existing code!
  • Fixes
    • Blast::Database: now handles multipart databases (such as local nr)
    • Blast: updated remote tests to BLAST 2.7.1+

Modules

Bio::MUST::Drivers
Bio::MUST classes for driving external programs
Bio::MUST::Drivers::Blast
Bio::MUST driver for running the NCBIBLAST+ suite of programs
Bio::MUST::Drivers::Blast::Database
internal class for BLAST driver
Bio::MUST::Drivers::Blast::Database::Temporary
internal class for BLAST driver
Bio::MUST::Drivers::Cap3
Bio::MUST driver for running the CAP3 assembly program
Bio::MUST::Drivers::CdHit
Bio::MUST driver for running the cd-hit program
Bio::MUST::Drivers::Exonerate
Bio::MUST driver for running the exonerate alignment program
Bio::MUST::Drivers::Exonerate::Aligned
Bio::MUST driver for running the exonerate alignment program
Bio::MUST::Drivers::Exonerate::Sugar
internal class for exonerate driver
Bio::MUST::Drivers::Hmmer
Bio::MUST driver for running HMMER3
Bio::MUST::Drivers::Hmmer::Model
internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Database
internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Temporary
internal class for HMMER3 driver
Bio::MUST::Drivers::Roles::Blastable
BLAST database-related methods
Bio::MUST::Drivers::Roles::Hmmerable
HMMER model-related methods
Bio::MUST::Drivers::Utils
Utility functions for drivers

Other files