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Bio-MUST-Drivers-0.181160
River stage one • 4 direct dependents • 4 total dependents

Changes for version 0.181160 - 2018-04-26

  • Additions
    • CdHit: added support for optional args to constructor
  • Fixes
    • Blast: makeblastdb and blastdbcmd now also honor BMD_BLAST_BINDIR
    • Blast: disabled some tests failing due to unstable results

Modules

Bio::MUST::Drivers
Bio::MUST classes for driving external programs
Bio::MUST::Drivers::Blast
Bio::MUST driver for running the NCBIBLAST+ suite of programs
Bio::MUST::Drivers::Blast::Database
Internal class for BLAST driver
Bio::MUST::Drivers::Blast::Database::Temporary
Internal class for BLAST driver
Bio::MUST::Drivers::Cap3
Bio::MUST driver for running the CAP3 assembly program
Bio::MUST::Drivers::CdHit
Bio::MUST driver for running the cd-hit program
Bio::MUST::Drivers::ClustalO
Bio::MUST driver for running the Clustal Omega program
Bio::MUST::Drivers::Exonerate
Bio::MUST driver for running the exonerate alignment program
Bio::MUST::Drivers::Exonerate::Aligned
Bio::MUST driver for running the exonerate alignment program
Bio::MUST::Drivers::Exonerate::Sugar
Internal class for exonerate driver
Bio::MUST::Drivers::Hmmer
Bio::MUST driver for running HMMER3
Bio::MUST::Drivers::Hmmer::Model
Internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Database
Internal class for HMMER3 driver
Bio::MUST::Drivers::Hmmer::Model::Temporary
Internal class for HMMER3 driver
Bio::MUST::Drivers::Mafft
Bio::MUST driver for running the MAFFT program
Bio::MUST::Drivers::Roles::Blastable
BLAST database-related methods
Bio::MUST::Drivers::Roles::Hmmerable
HMMER model-related methods
Bio::MUST::Drivers::Utils
Utility functions for drivers

Other files