NAME

get_subontology_from.pl - Extracts a subontology (in OBO format) of a given ontology having as root the given term ID.

USAGE

get_subontology_from.pl input_ontology.obo term_id > sub_ontology.obo

DESCRIPTION

Given an OBO-formatted ontology (such as the Gene Ontology), this script extracts a subontology (in OBO format) having as root node the provided term ID. This script can easily be adapted to get such subontology (branch) taking into account the name (or synonym) of a given term.

AUTHOR

Erick Antezana, <erick.antezana -@- gmail.com>

COPYRIGHT AND LICENSE

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.

To install OBO::Util::Set, copy and paste the appropriate command in to your terminal.

cpanm

cpanm OBO::Util::Set

CPAN shell

perl -MCPAN -e shell
install OBO::Util::Set

For more information on module installation, please visit the detailed CPAN module installation guide.

	Global
`s`	Focus search bar
`?`	Bring up this help dialog

	GitHub
`g` `p`	Go to pull requests
`g` `i`	go to github issues (only if github is preferred repository)

	POD
`g` `a`	Go to author
`g` `c`	Go to changes
`g` `i`	Go to issues
`g` `d`	Go to dist
`g` `r`	Go to repository/SCM
`g` `s`	Go to source
`g` `b`	Go to file browse

	Search terms
module: (e.g. module:Plugin)
distribution: (e.g. distribution:Dancer auth)
author: (e.g. author:SONGMU Redis)
version: (e.g. version:1.00)

NAME

USAGE

DESCRIPTION

AUTHOR

COPYRIGHT AND LICENSE

Module Install Instructions