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onto-perl-0.31

Changes for version 0.31

Documentation

onto-perl
perl modules for CCO and OBO ontologies
go2owl.pl
Gene Ontology (in OBO) to OWL translator.
obo2owl.pl
OBO to OWL translator.

Modules

CCO::Core::Dbxref
Reference structure.
CCO::Core::Def
Definition structure.
CCO::Core::GoaAssociation
a GOA association record.
CCO::Core::IDspace
A mapping between a "local" ID space and a "global" ID space
CCO::Core::Ontology
an ontology holding terms and their relationships
CCO::Core::Relationship
a relationship between two terms or two relationships within an ontology.
CCO::Core::RelationshipType
a type of relationship type in an ontology
CCO::Core::Synonym
A term synonym.
CCO::Core::Term
a universal in an ontology
CCO::Parser::GoaParser
A GOA associations to OBO translator.
CCO::Parser::InteractionManager
An IntAct to OBO parser/filter.
CCO::Parser::NCBIParser
A NCBI taxonomy to OBO translator.
CCO::Parser::OBOParser
An OBO (Open Biomedical Ontologies) file parser.
CCO::Parser::UniProtParser
A UniProt to OBO translator.
CCO::Util::CCO_ID
module for describing Cell Cycle Ontology (CCO) identifiers. Its namespace, subnamespace and number are stored.
CCO::Util::CCO_ID_Set
class implementing a set of CCO::Util::CCO_ID objects.
CCO::Util::CCO_ID_Term_Map
a map between CCO IDs and term names.
CCO::Util::DbxrefSet
a DbxrefSet implementation
CCO::Util::GoaAssociationSet
a GoaAssociationSet implementation
CCO::Util::ObjectIdSet
a Set implementation
CCO::Util::ObjectSet
class implementing a set of ontology objects.
CCO::Util::Set
a Set implementation
CCO::Util::SynonymSet
a Set implementation
CCO::Util::TermSet
a Set implementation

Provides

CCO::Core::Interaction
in CCO/Core/Interaction.pm
CCO::Core::Interactor
in CCO/Core/Interactor.pm
CCO::Util::XMLIntactParser
in CCO/Util/XMLIntactParser.pm

Other files