NAME

EBI::FGPT::FuzzyRecogniser

SYNOPSIS

The module EBI::FGPT::FuzzyRecogniser takes in the constructor an ontology file (OWL/OBO/OMIM/MeSH) and parses it into an internal table of ontology terms (type of EBI::FGPT::FuzzyRecogniser::OntologyTerm).

Perhaps a little code snippet.

use EBI::FGPT::FuzzyRecogniser;

my $foo = EBI::FGPT::FuzzyRecogniser->new();
...

AUTHOR

Emma Hastings , <emma at ebi.ac.uk>

SUPPORT

You can find documentation for this module with the perldoc command.

perldoc EBI::FGPT::FuzzyRecogniser

You can also look for information at:

• RT: CPAN's request tracker

  http://rt.cpan.org/NoAuth/Bugs.html?Dist=EBI-FGPT-FuzzyRecogniser

• AnnoCPAN: Annotated CPAN documentation

  http://annocpan.org/dist/EBI-FGPT-FuzzyRecogniser

• CPAN Ratings

  http://cpanratings.perl.org/d/EBI-FGPT-FuzzyRecogniser

• Search CPAN

  http://search.cpan.org/dist/EBI-FGPT-FuzzyRecogniser/

ACKNOWLEDGEMENTS

Tomasz Adamusiak <tomasz@cpan.org>

COPYRIGHT & LICENSE

Copyright 2011 emma.

This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.

See http://dev.perl.org/licenses/ for more information.

find_match()

Finds the best match for the supplied term in the ontology.

createOntologyTerm()

Creates an OntologyTerm object given its accession and annotations

parseMeSH()

Custom MeSH parser for the MeSH ASCII format.

parseMeSH()

Custom OMIM parser.

parseOBO()

Custom OBO parser.

parseOWL()

Custom OWL parser.