Changes for version 0.11 - 2010-12-16
- InterologWalk.pm: introduced look-up table for Genomes Taxa
- changed db names throughout for better readability
- setup_ensembl_adaptor(): fixed pan_homology bug
- setup_ensembl_adaptor(): removed 'default' db
- get_forward_orthologies(): updated docs
- get_forward_orthologies(): introduced genome name check when taxon id fails
- get_backward_orthologies(): updated docs
- get_backward_orthologies(): introduced genome name check when taxon id fails
- process_homologies(): introduced protein adaptor check
Modules
Retrieve, score and visualize putative Protein-Protein Interactions through the orthology-walk method
Provides
in lib/Bio/Homology/InterologWalk.pm
in lib/Bio/Homology/InterologWalk.pm
in lib/Bio/Homology/InterologWalk.pm