Changes for version 0.55 - 2011-09-08
- interface changes:
- get_direct_interactions(): introduced flag to allow for retrieval of chimeric (taxonA != taxonB) PPIs if desired
- do_attributes(): removed label_type flag. Now only "external name" can be used to populate name attribute file
- do_attributes(): introduced 'label_chimeric' to comply with changes in get_direct_interactions(). Introduced dynamic retrieval of gene_adaptor to find chimeric species and label gene names by species name bugfixes:
- _get_interactor_name(): fixed (gene name) problem due to intact change
- _get_ens_id_from_props(): included 'flybase' case due to intact change in properties field
- _get_ens_id_from_props(): introduced ensembl ID count: if only 1, accepted, if more, ambiguous case.
Modules
Retrieve, prioritise and visualize putative Protein-Protein Interactions through interolog mapping
Provides
in lib/Bio/Homology/InterologWalk.pm
in lib/Bio/Homology/InterologWalk.pm