#***********************************************************************************
#
PIPELINE= Report HTML da Bactéria do curso 
#
#***********************************************************************************
#===================================================================================
#PHASE= Upload XML
#program = upload_xml.pl
#xml_file = bacteria.xml
PHASE= Upload DB
program = upload_db.pl
#----------------------------------------------------------------------------------
ids_file = output_dir/upload.ids
#===================================================================================
                              # _||_ #
                              # \  / #
                              #  \/  #
#===================================================================================
PHASE= Report HTML
program = /home/wendelhlc/teste_database/upload_xml/report_html_db.pl
#===================================================================================
organism_name=Curtobacterium
fasta_dir = seq
aa_fasta_dir = orfs_aa
nt_fasta_dir = orfs_nt
infernal_output_file=infernal
alienhunter_output_file=alienhunter
reports_global_analyses=/home/wendelhlc/teste_database/upload_xml/output_dir/go_report/go_mapping.html;/home/wendelhlc/teste_database/upload_xml/output_dir/eggnog_report/classes.html;/home/wendelhlc/teste_database/upload_xml/output_dir/kegg_report/classes.html;/home/wendelhlc/teste_database/upload_xml/output_dir/kegg_organism_report/classes.html
report_feature_table_submission_dir = /home/wendelhlc/teste_database/upload_xml/output_dir/genbank_report
report_feature_table_artemis_dir = /home/wendelhlc/teste_database/upload_xml/output_dir/artemis_report
report_gff_dir = /home/wendelhlc/teste_database/upload_xml/output_dir/gff3_dir
TCDB_file=/usr/local/genome/databases/TCDB/TCDB_ID_list
ko_file= /usr/local/genome/databases/kegg/ko/ko
homepage_text_file = /home/wendelhlc/teste_database/upload_xml/curtobacterium.json
homepage_title = "<i>Curtobacterium</i> sp. ER1/6 genome project"
#ADD IMAGE
homepage_image_organism = /home/wendelhlc/curtobacterium.jpg
#homepage_banner_image = /home/wendelhlc/Downloads/rsz_platypus256x256.png
filepath_log = /home/wendelhlc/teste_database/upload_xml/output_dir/report_html_db.log
component_name_list = annotation_trf.pl;annotation_trna.pl;annotation_alienhunter.pl;annotation_infernal.pl;annotation_rnammer.pl;annotation_transterm.pl;annotation_rbsfinder.pl;annotation_bigpi.pl;annotation_predgpi.pl;annotation_tcdb.pl;annotation_phobius.pl;annotation_tmhmm.pl;annotation_signalP.pl;annotation_blast.pl;annotation_rpsblast.pl;annotation_interpro.pl;annotation_orthology.pl;annotation_pathways.pl;annotation_mreps.pl;annotation_glimmer3.pl;annotation_hmmer.pl;annotation_dgpi
annotation_dir=/home/wendelhlc/teste_database/upload_xml/output_dir
filepath_assets=/home/wendelhlc/git/report_html_db/report_html_db/assets.tar.gz
#color_primary = "#3182bd"
#color_accent = "#6baed6"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#08519c"
#color_background = ""
#color_footer = ""
#color_footer_text = ""
####
# Color 1
color_primary = "#94618e"
color_accent = "#94618e"
color_primary_text = "#FFF"
color_accent_text = "#FFF"
color_menu = "#49274A"
color_background = "#F8EEE7"
color_footer = "#F4DECB"
color_footer_text = "#333"  
#
####
#
# Color 2
#color_primary = "#0B3C5D"
#color_accent = "#328CC1"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#1D2731"
#color_background = "#FFF"
#color_footer = "#D9B310"
#color_footer_text = "#333"  
#
####
#
# Color 3
#color_primary = "#EC576B"
#color_accent = "#4EC5C1"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#1A2930"
#color_background = "#FFF"
#color_footer = "#E9E852"
#color_footer_text = "#333"  
#
####
#
# Color 4
#color_primary = "#57BC90"
#color_accent = "#77C9D4"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#015249"
#color_background = "#FFF"
#color_footer = "#A5A5AF"
#color_footer_text = "#333"  
#
####
#
# Color 5
#color_primary = "#EC576B"
#color_accent = "#4EC5C1"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#1A2930"
#color_background = "#FFF"
#color_footer = "#E9E852"
#color_footer_text = "#333"  
#
####
#
# Color 6
#color_primary = "#FF533D"
#color_accent = "#AB987A"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#0F1626"
#color_background = "#F5F5F5"
#color_footer = "#F5F5F5"
#color_footer_text = "#333"  
#
####
#
# Color 7
#color_primary = "#CF6766"
#color_accent = "#8EAEBD"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#031424"
#color_background = "#FFF"
#color_footer = "#30415D"
#color_footer_text = "#FFF"  
#
####
#
# Color 8
#color_primary = "#01ABAA"
#color_accent = "#FEDC3D"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#000"
#color_background = "#FFF"
#color_footer = "#FEA680"
#color_footer_text = "#FFF"  
#
####
#
# Color 9
#color_primary = "#6BBAA7"
#color_accent = "#FBA100"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#6C648B"
#color_background = "#FFF"
#color_footer = "#B6A19E"
#color_footer_text = "#FFF"  
#
####
#
# Color 10
#color_primary = "#056571"
#color_accent = "#FF6A5C"
#color_primary_text = "#FFF"
#color_accent_text = "#FFF"
#color_menu = "#414141"
#color_background = "#FFF"
#color_footer = "#CCDFCB"
#color_footer_text = "#333"  
#
#===================================================================================