#***********************************************************************************
#
PIPELINE= Report HTML da Bactéria do curso
#
#***********************************************************************************
#===================================================================================
PHASE= Upload XML
program = upload_xml.pl
xml_file = bacteria.xml
#===================================================================================
# _||_ #
# \ / #
# \/ #
#===================================================================================
PHASE= Report HTML
program = report_html_db.pl
#===================================================================================
html_dir=TESTE4
organism_name=Bacteria do curso
uniquename=Bacteria
type_target_class_id=81525
pipeline=4528
fasta_dir = seq
aa_fasta_dir = orfs_aa
nt_fasta_dir = orfs_nt
fasta_file = bacteria.fasta
aa_orf_file = glimmer3_dir/genes_aa.fasta
nt_orf_file = glimmer3_dir/genes_nt.fasta
trf_dir = /home/wendelhlc/git/report_html_db/report_html_db/trf_dir
trna_dir = /home/wendelhlc/git/report_html_db/report_html_db/trna_dir
alienhunter_dir = /home/wendelhlc/git/report_html_db/report_html_db/alienhunter_dir
alienhunter_output_file = alienhunter.txt
infernal_dir = /home/wendelhlc/git/report_html_db/report_html_db/infernal_dir
infernal_output_file = infernal.txt
rnammer_dir = /home/wendelhlc/git/report_html_db/report_html_db/rnammer_dir
transterm_dir = /home/wendelhlc/git/report_html_db/report_html_db/transterm_dir
rbs_dir = /home/wendelhlc/git/report_html_db/report_html_db/rbsfinder_dir
tcdb_dir = /home/wendelhlc/git/report_html_db/report_html_db/tcdb_dir
phobius_dir = /home/wendelhlc/git/report_html_db/report_html_db/phobius_dir
tmhmm_dir = /home/wendelhlc/git/report_html_db/report_html_db/tmhmm_dir
signalp_dir = /home/wendelhlc/git/report_html_db/report_html_db/signalp_dir
blast_dir = /home/wendelhlc/git/report_html_db/report_html_db/blastp_dir
rpsblast_dir = /home/wendelhlc/git/report_html_db/report_html_db/rpsblast_dir
interpro_dir = /home/wendelhlc/git/report_html_db/report_html_db/interpro_dir
orthology_dir = /home/wendelhlc/git/report_html_db/report_html_db/eggnog_dir
report_go_dir=/home/wendelhlc/git/report_html_db/report_html_db/go_report/go_mapping.html;
report_eggnog_dir= /home/wendelhlc/git/report_html_db/report_html_db/eggnog_report/classes.html;
report_pathways_dir = /home/wendelhlc/git/report_html_db/report_html_db/kegg_report/classes.html;
report_kegg_organism_dir=/home/wendelhlc/git/report_html_db/report_html_db/kegg_report/classes.html;/home/wendelhlc/git/report_html_db/report_html_db/kegg_report/classes.html
blast_dir_list=/home/wendelhlc/git/report_html_db/report_html_db/blastp_dir
database_code_list=INSD
TCDB_file=/usr/local/genome/databases/TCDB/TCDB_ID_list
ko_file= /usr/local/genome/databases/kegg/ko/ko
homepage_text_file = example.json
homepage_banner_image = /home/wendelhlc/Downloads/rsz_platypus256x256.png
filepath_log = /home/wendelhlc/git/report_html_db/report_html_db/report_html_db.log
#===================================================================================