/ 
MassSpec-ViewSpectrum-RealVsHypPeptide-0.01
River stage zero No dependents
/ MassSpec::ViewSpectrum::RealVsHypPeptide

NAME

MassSpec::ViewSpectrum::RealVsHypPeptide - View a real mass spectrum on the same graph as a hypothetical spectrum generated by fragmenting a peptide in silico

SYNOPSIS

 use MassSpec::ViewSpectrum::RealVsHypPeptide;
 open GRAPHIC, ">mygraphic.png" or die "Unable to open output file\n";
 binmode GRAPHIC;

 my @masses = (78.1,81.1,81.7,85.4,86.8,88.8,89.4,97.6,99.0,99.4,108.7,112.1,129.1,
   130.1,132.1,147.7,157.1,158.1,159.1,169.1,171.1,175.1,187.1,229.1,246.2,258.1,
   266.0,327.2,328.2,345.2,415.2,426.2,432.2,531.2,559.3,623.4,639.3,643.3,644.4,
   645.0,647.5,686.4,687.4,689.4);
 my @intensities = (8.7,7.7,7.3,10.5,7.7,7.3,8.4,8.0,9.1,9.1,7.3,29.0,12.6,7.3,8.0,
   7.7,11.9,9.8,10.1,7.3,10.5,131.0,9.4,50.3,22.7,44.7,16.8,30.4,18.2,53.1,25.5,
   15.7,7.7,14.0,46.8,38.4,7.3,11.5,8.7,7.3,8.7,7.3,24.8,194.2);
 my $peptide = "RTSVAR";

 my $vs = MassSpec::ViewSpectrum::RealVsHypPeptide->new($peptide, \@masses,\@intensities);
 $vs->set(yaxismultiplier => 1.8); # a sample tweak to adjust the output
 $vs->set(title => "BSA-689 -- " . $peptide);

 my $output = $vs->plot();
 print GRAPHIC $output;
 close GRAPHIC;

DESCRIPTION

Stub documentation for MassSpec::ViewSpectrum::RealVsHypPeptide, created by h2xs. It looks like the author of the extension was negligent enough to leave the stub unedited.

Blah blah blah.

SEE ALSO

Mention other useful documentation such as the documentation of related modules or operating system documentation (such as man pages in UNIX), or any relevant external documentation such as RFCs or standards.

If you have a mailing list set up for your module, mention it here.

If you have a web site set up for your module, mention it here.

AUTHORS

Jonathan Epstein, <Jonathan_Epstein@nih.gov>
Matthew Olson, <olsonmat@mail.nih.gov@mail.nih.gov>
Xiongfong Chen, <xchen@helix.nih.gov@mail.nih.gov>

COPYRIGHT AND LICENSE

                         PUBLIC DOMAIN NOTICE

       National Institute of Child Health and Human Development

This software/database is a "United States Government Work" under the
terms of the United States Copyright Act.  It was written as part of
the author's official duties as a United States Government employee and
thus cannot be copyrighted.  This software/database is freely available
to the public for use. The National Institutes of Health and the U.S.
Government have not placed any restriction on its use or reproduction.

Although all reasonable efforts have been taken to ensure the accuracy
and reliability of the software and data, the NIH and the U.S.
Government do not and cannot warrant the performance or results that
may be obtained by using this software or data. The NIH and the U.S.
Government disclaim all warranties, express or implied, including
warranties of performance, merchantability or fitness for any particular
purpose.

Please cite the author in any work or product based on this material.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.5 or, at your option, any later version of Perl 5 you may have available.