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Bio-Grep-v0.10.6
River stage zero No dependents

Changes for version 0.10.6 - 2009-11-12

  • Perl::Tidy 20090616 passes
  • Added Test::NoWarnings to tests
  • Build dist benchmarks more automated, support for new Sys::Info
  • Agrep back-end: check if agrep is TRE in search(), not new()
  • use autodie instead of Fatal
  • Bugfixes: Fix Warning with Bioperl 1.6.1 (thanks Jeremy)

Documentation

Bio::Grep::Benchmarks
Bio::Grep Benchmarks
Bio::Grep::Cookbook
Bio::Grep Cookbook

Modules

Bio::Grep
Perl extension for searching in DNA and Protein sequences
Bio::Grep::Backend::Agrep
Agrep back-end
Bio::Grep::Backend::BackendI
Superclass for all back-ends
Bio::Grep::Backend::GUUGle
GUUGle back-end
Bio::Grep::Backend::RE
Perl Regular Expression back-end
Bio::Grep::Backend::Vmatch
Vmatch back-end
Bio::Grep::Filter::FilterI
Superclass for all filter modules
Bio::Grep::Filter::FilterRemoveDuplicates
Example Filter
Bio::Grep::Root
Superclass for all Bio::Grep* packages
Bio::Grep::SearchResult
Data structure for a back-end search hit
Bio::Grep::SearchSettings
Data structure for all search settings

Examples

Other files