CLIPSeqTools

Summary

CLIPSeqTools is a collection of scripts that can be used for the analysis of CLIP-Seq data. The toolbox is primarily oriented for bioinfromaticians but we try to make it a simple as possible so that even biologists with a little bit of command line background could run most of the analysis.

Installation

• Using CPAN - Not yet supported
  1. If you have cpanm installed. cpanm CLIPSeqTools.
  2. If you do not have cpanm. See here.
• Using Git - Preferred so you may contribute
  1. Install git (directions).
  2. Install dependencies (listed below) from CPAN. How to install CPAN modules.
  3. Clone the repository on your machine git clone https://github.com/palexiou/GenOO-CLIP.git.

Dependencies (maybe not exhaustive)

• GenOO
• Pod::Usage
• Modern::Perl

State

The toolbox is under heavy development and functionality is added regularly. Consider it unstable.

Copyright

Copyright (c) 2014 Emmanouil "Manolis" Maragkakis and Panagiotis Alexiou.

License

This library is free software and may be distributed under the same terms as perl itself.

This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of merchantability or fitness for a particular purpose.