NAME

CLIPSeqTools::PreprocessApp::trim_fastq - Trim N nucleotides from the start and/or end of FASTQ sequences.

SYNOPSIS

clipseqtools-preprocess trim_fastq [options/parameters]

DESCRIPTION

Trim the sequences in a fastq file. Removes N nucleotides from the start and/or end of each sequence.

OPTIONS

Input.
  --fastq <Str>          FASTQ file with reads.
  --N_from_start <Int>   Number of nucleotides to trim from the start of
                         each sequence. [Default: 0]
  --N_from_end <Int>     Number of nucleotides to trim from the end of
                         each sequence. [Default: 0]

Output
  --o_prefix <Str>       output path prefix. Script will create and add
                         extension to path. [Default: ./]

Other options.
  -v --verbose           print progress lines and extra information.
  -h -? --usage --help   print help message